Showing 13 results for Saleh
Hamid Staji, Alfreda Tonelli, Taghi Zahraei Salehi, Mariangela Iorio, Federica Lopes,
Volume 3, Issue 1 (1-2015)
Abstract
Introduction: In Iran, invasive nontyphoidal Salmonella (iNTS) disease causes severe bacteremic illness among children <5 years old. The global yearly incidence of iNTS disease in children was reported to be in the 3.4 (range 2.1-6.5) million cases, (overall incidence 49 cases (range 30-94) per 100,000 population), the iNTS case-fatality ratio (CFR) of 20% yielded 681,316 deaths annually. Methods: The microarray analysis enables identification of the strains that have the 90kb Salmonella typhimurium virulence plasmid, presence or absence of the Salmonella pathogenicity islands (SPIs), adherence factors and other virulence determinants. Twelve isolates of S. typhimurium obtained from faeces of children with gastroenteritis were analyzed by microarray technique. Results: The virulence plasmid was present in 83.33% of isolates and all the isolates contained the SPI-4 and SPI-5. None of the strains had the cytolethal distending toxin, cdtB. All strains were positive for rck and mig-14. The adherence genes were present in all the strains in the range of 51.55% to 73.20% of the adherence genes interrogated in the microarray. Two strains were the least pathogenic S. typhimurium. Conclusion: Microarray analysis proved to be a valuable tool in confirmation of serotyping results and genetic characterization of S. Typhimurium.
Matin Saberi, Hojjatolah Zamani, Ali Salehzadeh,
Volume 3, Issue 3 (7-2015)
Abstract
Introduction: Pseudomonas aeruginosa is one of the leading causes of nosocomial infections, and antibiotic resistance of this pathogen is an important concern in treating such infections. The current work was conducted to investigate the prevalence of bla-IMP, and bla-VIM metallo-beta-lactamase (MBL) among clinical and environmental P. aeruginosa isolates obtained from ICUs of different hospitals in Rasht, Iran. Methods: A total number of 35 P. aeruginosa strains including 20 clinical and 15 environmental strains were isolated from ICUs. The isolated bacteria were screened for MBL production using Combined Disc Synergy Testing (CDST) assay. The frequency of bla-IMP and bla-VIM among MBL producing P. aeruginosa (MBL-PA) was investigated using Polymerase Chain Reaction (PCR). Also, the antibiotic susceptibility of all isolates was determined. Results: According to the results, 51% of isolates were regarded as MBL-PA while bla-IMP or bla-VIM genes were detected in 37% of isolates. The environmental isolates showed higher resistance to the majority of antibiotics compared to the clinical isolates, and MBL genes were more prevalent among environmental isolates. Conclusion: Higher resistance of environmental P. aeruginosa strains in ICUs shows a need to pursue newer approaches, including novel cleaning methods and surveillance programs, to reduce nosocomial infections.
Mehdi Fazlalipour, Vahid Baniasadi, Mohammad Hassan Pouriayevali, Tahmineh Jalali, Tahereh Mohammadi, Sanam Azad-Manjiri, Yasaman Jamshidi, Sara Azizizadeh, Motahareh Hosseini, Sahar Khakifirouz, Mostafa Salehi-Vaziri,
Volume 4, Issue 1 (1-2016)
Abstract
[No Abstract] Crimean-Congo hemorrhagic fever (CCHF) is considered as the most important arboviral infection in Iran. Early diagnosis of CCHF is essential for preventing the spread of the infection and providing appropriate treatment to patients. Given that clinical symptoms of CCHF may overlap with other common infectious disease; differential diagnosis is a matter of great importance. In this report, we describe a case of rheumatoid arthritis intoxicated with methotrexate mimicking CCHF. This observation suggests that non-infectious medical conditions such as drug toxicity should be considered as a possible differential diagnosis of CCHF.
Marziye Taheri, Moein Saleh, Amir Hesam Nemati, Mehdi Ariana, Esfandiar Shojaei, Masoud Mardani, Mohammad Katouli, Mohammad Pooya,
Volume 4, Issue 3 (7-2016)
Abstract
Introduction: Almost 80% of nosocomial urinary tract infections (UTIs) are due to catheterization. Catheter-associated UTI (CAUTI) is the primary source for colonization of antibiotic-resistant pathogens, and uropathogenic Escherichia coli (UPEC) is the most common causative bacteria. This study was conducted to determine the phylogenetic groups, and antibiotic resistance pattern as the two important features of pathogenicity of UPEC isolates collected from urinary catheters. Methods: The UPEC isolates were obtained from the urinary catheters of the patients without UTI, from two referral hospitals during 2015 to 2016. Phylogenetic grouping was performed using a multiplex PCR. Antibiotic susceptibility and extended spectrum beta-lactamase (ESBL) production were tested by the disc diffusion method. Multidrug resistance was determined based on a recent guideline. The presence of some resistance genes was examined by a PCR assay. Results: Thirty-eight percent of the isolates were UPEC, all of them belonged either to B2 (62.5%) or D (37.5%) phylogenetic groups. The UPEC isolates showed a very high resistance to ciprofloxacin (80%) and the third-generation cephalosporins (72.5%). Seventy percent of the isolates were ESBL-producing, and 90% of them were multiple drug resistant (MDR). Meanwhile, the frequency of the resistance genes: ctxM, aacIV, sul1, shv, and qnrA in the isolates were 95%, 82.5%, 77.5%, 72.5%, and 45%, respectively. Conclusion: High resistance to fluoroquinolones and third-generation cephalosporins, as well as high frequency of ESBL-producing and MDR UPEC isolates, are a great concern. This phenomenon is probably the consequence of the indiscriminate use and on the counter availability of antibiotics, which should be considered in empirical therapy of CAUTIs.
Ali Salehzadeh, Maryam Ghauor,
Volume 5, Issue 1 (1-2017)
Abstract
Introduction: Urinary tract infection (UTI) is one of the most common infectious diseases, and Escherichia coli is known as the most dominant causative agent of this infection in 90-80% of patients. There is not much information about the phylogenetic groups, types, and virulence factors of E. coli, causing UTIs from Iran. The objective of this study was to evaluate the antimicrobial susceptibility of E. coli strains isolated from patients with UTI and to determine the phylogenetic classification of the strains. Methods: In this cross-sectional study, 100 E. coli isolates were collected from patients with UTI from five laboratories in Rasht city. The isolates were confirmed by using morphological and biochemical common tests. The frequency of virulence genes and patterns of phylogenetic groups were performed using Multiplex PCR. Additionally, antimicrobial susceptibility of all isolates was evaluated by disk diffusion method. Results: Distribution of phylogenetic B2, D, A and B1 groups in the isolates were 64%, 24%, 12%, and 0%, respectively. The highest antibiotic resistance was reported to cefotaxime (84%), piperacillin, and cefixime (80%), and the lowest resistance was demonstrated to imipenem (8%), chloramphenicol and gentamicin (12%). Conclusion: Our findings showed that the B2 was the most prevalent phylogenetic group and the most resistant strain to generally used antibiotics among patients with UTI.
Ehsan Mostafavi, Kourosh Holakouie-Naieni, Mostafa Salehi Vaziri,
Volume 5, Issue 3 (7-2017)
Abstract
[No Abstract]
To the editor: In a recent publication entitle “Surveillance of Crimean-Congo haemorrhagic fever in Pakistan” published in “The Lancet Infectious Diseases”, the authors claimed that before the Eid al-Adha, Crimean-Congo Hemorrhagic Fever (CCHF)-livestock infected are imported from Iran and Afghanistan to Baluchistan province of Pakistan and then transferred to other areas of the country
Elham Saeedi, Nematollah Jonaidi Jafari, Ali Salehzadeh,
Volume 6, Issue 1 (1-2018)
Abstract
Introduction: Giardia lamblia is a protozoan parasite with universal distribution in human populations. This infections transfer to human via contaminated foods and waters with Giardia cysts. The Knowledge on the incidence of this agent in the potential infection sources can provide valuable information for control and the spread of this parasite to human communities. This study was aimed to isolate and identify the Giardia lamblia cysts in the surface waters of Rasht city, Guilan province, north of Iran with microscopy and PCR assay. Methods: This cross-sectional study was performed on 45 samples of surface waters collected from rivers and wetlands in the vicinity of Rasht city. The samples were concentrated using nitrocellulose membrane filters, and the sediments were examined for Giardia cysts by microscopy with a magnification of 1000 X. Also, DNA was extracted from the sediments, and the heat shock protein gene of G. lamblia was amplified. Results: From 45 samples, 33.33% and 40% were positive by microscopy and PCR, respectively. Conclusion: In comparison with the standard microscopic method, PCR showed more sensitivity for detection of G. lamblia cysts in water samples.
Sahar Khakifirouz, Seyed Javad Mowla, Vahid Baniasadi, Mehdi Fazlalipour, Tahmineh Jalali, Seyedeh Maryam Mirghiasi, Mostafa Salehi-Vaziri,
Volume 6, Issue 4 (10-2018)
Abstract
Introduction: Crimean Congo Hemorrhagic Fever (CCHF) is a fatal tick-borne viral zoonosis with a case fatality rate of 5% to 30%. CCHF has been documented as the most frequent tick-borne viral infection in Iran with more than 50 cases annually. Kerman Province in the south of Iran is one of the CCHF-endemic areas of the country, but no data on infection of ticks with this virus from this area is available. This study aimed to investigate the CCHFV infection among ticks collected from 4 different counties in this province. Methods: In 2011, a total of 203 hard ticks were collected from Kerman, Jiroft, Sirjan, and Kuhbanan counties in Kerman Province, southeast of Iran. Infection of ticks with CCHFV was investigated using RT-PCR targeting the small segment of the viral genome. Results: Out of 203 ticks, Dermacentor (50.24%) was the most frequent genus followed by Hyalomma (39.39%), Haemaphysalis (9.85%) and Rhipicephalus (0.49%). Our results showed no CCHFV infection of ticks. Conclusion: Our finding indicates no circulation of CCHFV in ticks from Kerman Province. However, as Kerman Province is an endemic region for CCHF, further investigations are needed to have a better understanding of the CCHFV vectors in this region.
Pedram Talaie, Mohammad Mehdi Sedaghat, Ehsan Mostafavi, Zakiyeh Telmadarraiy, Mehdi Rouhani, Mostafa Salehi-Vaziri,
Volume 8, Issue 2 (4-2020)
Abstract
Introduction: Crimean-Congo hemorrhagic fever (CCHF) is a tick-borne viral zoonosis with a considerable fatality rate. The virus is mainly transmitted to humans and animals through the bites of infected hard ticks belonging to the genus Hyalomma. This study aimed to determine the prevalence of CCHFV in ticks in Shahr-e Ray city, one of the meat supplier counties in Tehran Province, Iran. Methods: A molecular survey was carried out on collected ticks from sheep in slaughterhouses and husbandries of Shahr-e Ray city, during 2016-17. The ticks were identified using taxonomic characteristics, and the presence of CCHF virus RNA was investigated using an RT-PCR amplifying a 536 bp of the small segment of the viral genome. Results: The results of this study showed that the Hyalomma ticks were the dominant species in Shahr-e Ray slaughterhouses and husbandries. In none of the assayed ticks, RT-PCR detected CCHFV RNA. Conclusion: A considerable tick infestation with members of genus Hyalomma, among sheep in Shahr-e Ray slaughterhouses and husbandries, indicates the vulnerability of this county of tick-borne infections outbreaks such as CCHF. Therefore, applying acaricides and other preventive strategies should be adopted to control the tick population in Shahr-e Ray.
Parviz Saleh, Airin Sheikholeslami, Aida Salman Mohajer, Sara Babapour, Mohammad-Salar Hosseini,
Volume 8, Issue 4 (10-2020)
Abstract
Introduction: Hepatitis C virus (HCV) infection and type 2 Diabetes Mellitus (T2DM) are among the severe threats to health care systems worldwide. Here, we investigated the association of HCV genotypes and cirrhosis with T2DM among HCV-positive patients. Methods: This descriptive-analytical study was performed from Jan 2017 to Jan 2018 at Sina Clinical-Educational infectious diseases ward, the reference center of infectious diseases in northwest Iran. All serology HCV–positive patients attending this center were included in the study. Forty-eight patients were included, 19 of which had a positive history of diabetes. Blood samples from patients were used for complete blood count, liver function tests, fasting blood sugar, HbA1C, HCV antibodies, and HCV genotype. Then the characteristics among patients with and without T2DM were compared. A P-value of less than 0.05 was considered statistically significant. Results: No significant difference in demographic variables were observed between patients with and without T2DM. Of 48 patients with HCV infection, 29 patients (39.58%) had T2DM. The hepatitis C infection duration among diabetic and non-diabetic patients was 9.03 ± 0.76 years and 8.53 ± 1.01 years, respectively (P = 0.04). Of 8 patients with cirrhosis, six patients (75%) had diabetes. The relative risk for diabetic patients with HCV infection to develop cirrhosis was 4.57 (95% CI [1.02-20.36], P = 0.04). The most prevalent genotype was HCV type 1 among both diabetic and non-diabetic groups. No significant association was observed in logistic regression analysis between the HCV genotypes and T2DM (P = 1.000). Conclusion: In the current study, we showed that patients with HCV infection are at a higher risk of developing T2DM, and T2DM showed to be a risk factor for the developing cirrhosis among patients with HCV infection.
Fatemeh Shahdadi, Maryam Payandeh, Ali Salehi Sardoei,
Volume 9, Issue 1 (3-2021)
Abstract
Introduction: Dracocephalum polychaetum Bornm and Nepeta cataria L. are two plants from the Lamiaceae family with antibacterial, antifungal, and antiviral properties. This study evaluated the phenolic compounds, antioxidant activity, and effect of aqueous extracts on the survival of Lactobacillus acidophilus and Bifidobacterium animalis in a simulated gastrointestinal environment. Method: The aerial parts of plants were collected at the vegetative growth stage from the Hanza-Kuh's highlands in the Bahr Asman region of Jiroft city, Iran, in spring 2018. The total phenolic content of plants and antioxidant activity were measured using Folin–Ciocalteau and DPPH (2, 2-diphenyl-1-picrylhydrazyl) methods, respectively. For investigating the survival of probiotic bacteria in a simulated gastrointestinal environment, bacterial suspension was inserted into tubes containing 0, 100, 250, 500, and 1000 ppm of extracts and then incubated in a simulated gastrointestinal environment. The probiotic bacteria were counted using an MRS agar medium at various incubation times. Results: The results showed that the amount of total phenolic compounds in the D. polychaetum Bornm extract (44.55 mg/g dry matter) was higher than that of N. cataria L. (18.37 mg/g dry matter). With increased extracts concentrations, the percentage of DPPH-free radicals increased, and D. polychaetum Bornm extract in all concentrations showed higher DPPH free radical inhibitory content compared to the N. cataria L. extract. The viability results in the same gastrointestinal environment showed that samples containing N. cataria extract had a more remarkable survival rate than the controls and D. polychaetum Bornm extract. Conclusion: Using less than 500 ppm of D. polychaetum Bornm and N. cataria L. aqueous extracts can increase probiotic bacteria growth and viability.
Ali Maleki, Mohammad Hassan Pouriayevali, Mahsa Tavakoli, Zahra Ahmadi, Farideh Niknam Oskouei, Zahra Nejatipour, Tahmineh Jalali, Mostafa Salehi-Vaziri,
Volume 10, Issue 2 (6-2022)
Abstract
In the SARS-CoV-2 pandemic, the seasonal viral respiratory infections had a minimum prevalence due to public health precautions to reduce the risk of getting Coronavirus Disease 19 (COVID-19). There have been reports of COVID-19 coinfection with influenza, respiratory syncytial virus (RSV), and seasonal coronaviruses during the pandemic. Here, we report a case in which the patient had sequential respiratory infections of human coronavirus HKU1 (HCoV-HKU1) and SARS-CoV-2 in a fully vaccinated, healthy person. It should be noted that other seasonal coronaviruses that could cause symptomatic RTIs might be misdiagnosed clinically with COVID-19. Hence, we highly recommend monitoring and follow-up of symptomatic patients with negative SARS-COV-2 RT-PCR results.
Ali Maleki, Zahra Fereydouni, Mahsa Tavakoli, Akram Ezani, Mirshamsedin Hosseini, Amir Hesam Nemati, Parastoo Yektay Sanat, Tahmineh Jalali, Mohammad Hassan Pouriayevali, Mostafa Salehi-Vaziri,
Volume 10, Issue 3 (9-2022)
Abstract
Precision tracking and monitoring viral genome mutations are critical during a viral pandemic such as COVID-19. As molecular assays for diagnosing numerous infectious agents are being developed, RT-PCR is still deployed as the gold standard for detecting SARS-CoV-2. Despite its proofreading capability, SARS-CoV-2, like other RNA viruses, adopts several changes in its genome. If these mutations, especially deletions, occur in the target areas of primers and probes, they will hinder molecular detection methods from identifying the given gene. The authors describe the cases in which, despite the lack of the N gene detection, the ORF1ab gene was discovered with a relatively low cycle of threshold (Ct). Following sequencing, changes were discovered in the annealing region of the forward and reverse primers and probes used in the SARS-CoV-2 detection kit. Among the most significant mutations is a large deletion of 15 nucleotides in the N gene, which has never been seen in prior variants. This highlights the importance of persistent monitoring of hypervariable regions in the SARS-CoV-2 genome through sequencing and updating the molecular detection kits during the COVID-19 pandemic.
