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Showing 2 results for Alikhani

Maryam Esmaeili, Samaneh Saberi, Mehdi Alikhani, Mojgan Hatefi, Mohammad Tashakoripour, Mahmoud Eshagh Hosseini, Mohammad Ali Mohagheghi, Marjan Mohammadi,
Volume 4, Issue 1 (1-2016)
Abstract

Introduction: Helicobacter pylori, as an etiologic cause of peptic ulcers and gastric cancer, should be tested and treated. The true state of infection can only be detected by isolation of gastric biopsies through the invasive method of gastroscopy. However, there are several non-invasive methods for detection of infection, the most common of which is serology. Methods: Here we have evaluated the efficacy of two commonly used commercial IgG-based ELISA kits (Kit-1 and Kit-2) against the endoscopy (biopsy)-based methods of rapid urease test (RUT) and bacterial culture. Our study population included 754 subjects categorized as having: 1) nonulcer dyspepsia (NUD, N=485), 2) peptic ulcer disease (PUD, N=65), and 3) gastric cancer (GC, N=204). Results: The rates of agreement between the results obtained by Kit-1, Kit-2 and both kits with culture/RUT were 62.4% (318 of 500, P=0.0001), 74.4% (183 of 246, P<0.0001), and 81.8% (117 of 143, P<0.0001), respectively. The agreement rate between the two kits, regardless of the results of the culture and RUT, was 83.6% (147 of 176, P<0.0001), leaving 16.4% of the subjects with discrepant results. The sensitivity rate and more drastically the specificity rates (against biopsy-based tests), claimed by Kit-1 (100% and 75%) and Kit-2 (>96% and >99%) were significantly reduced (Kit-1: 94.4% and 40.3%; Kit-2: 86.5% and 71%) for the Iranian population. Conclusion: Our data raises questions regarding the accuracy of commercial IgG-based ELISA kits for the detection of H. pylori infection. Therefore, caution should be practiced when such tests are used as the sole basis of medical decision making.


Mohammad Faezi Ghasemi, Fatemeh Alikhani,
Volume 4, Issue 3 (7-2016)
Abstract

Introduction: Bacteria have at least one sigma factor (σ-factor) that transcribes the genes required for cell viability. Usually, transcription of σ-factors occurs and changes in response to a variety of environmental stresses. Expression of σ-factors is one of the strategies which is used in response to different stress conditions. This study was aimed to evaluate the effects of overexpression of σ-factors genes including σA, σB, σD, σE, σF, σG, σH, σJ, σK, σL, and σM on morphology, growth pattern and biofilm formation in Mycobacterium marinum CCUG 20998. Methods: In this study, the genes for major σ-factors were cloned in the expression vector pAGHD1, containing 11 kb Hind III fragment of pAG1 and Tetz determinants. A quantitative real-time PCR (qRT-PCR) assay was used to quantify σ-factor mRNA levels of σ-factors in exponential and stationary phases. The overexpression in real-time experiments was normalized to the σA expression level. The effect of expression was evaluated on biofilm formation in this bacterium. Results: Some selected σ-factors used in this study were overexpressed. The σB had the highest expression level during the exponential and stationary phases. The σ-factors σD, σG, and σH showed lower expression level compared with σE, σF, and σK. The lowest expression belonged to σL and σM σ-factors. Also, overexpression of σE and σK led to more biofilm formation in comparison to other σ-factors in M. marinum CCUG 20998. Conclusion: The overexpression of some σ-factors can affect growth, morphology and biofilm formation in M. marinum CCUG 20998.


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